Blogs sobre: Bioinformatics
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Segmentation Fault when using Pymol and APBS
APBS is a software package for modelling biomolecule solvation. Which means, it is useful for getting to know the electrostatics of your protein at a given pH. You can learn more about it here: http:/… mais →
Doei Doei
Segmentation Fault when using Pymol and APBS
escreveu 4 weeks ago: APBS is a software package for modelling biomolecule solvation. Which means, it is useful for gettin … mais →
Displaying ribbon/cartoon in CA-only PDB files with PyMOL
escreveu 1 month ago: PyMOL is a molecular visualisation program that takes PDB files and reads all those ATOM lines and s … mais →
Download and install PyMOL 1.2 on Ubuntu Linux
— 3 comments
escreveu 1 month ago: PyMOL is a molecular visualisation tool originally developed by Dr. Warren DeLano, who unfortunately … mais →
Eh eh
— 5 comments
escreveu 1 month ago: Uma boa razão para não se escrever no MSN e tentar trabalhar ao mesmo tempo joao@muse:~/Desktop/Prop … mais →
Regular Expression to Match a DOI (Digital Object Identifier)
— 4 comments
escreveu 2 months ago: The DOI (Digital Object Identifier) is an unique identifier used in biomedical publications (and in … mais →
Introduction and what I am doing during my Masters
— 2 comments
escreveu 5 months ago: Hello world! My name is Rogério and I am a colleague and friend of this blog’s founder, JP. I … mais →
Zotero Offline
escreveu 5 months ago: Este fim-de-semana deparei-me com o problema. Antes que vos aconteça também a vocês e fiquem à nora … mais →
Pymol super useful tip for Renumbering residues
escreveu 6 months ago: This is already in the Pymol Wiki, but still, I was so happy when I found it # The first residue in … mais →
ModeloMatic webserver launched
escreveu 6 months ago: ModeloMatic Homology modeling can be a boring repetitive job for people who have to do it time and t … mais →
Linux iz confused :x
— 1 comment
escreveu 7 months ago: [...].html/modelomatic> ls modelomatic [...].html/modelomatic> rm modelomatic/ rm: cannot remo … mais →
Ferramentas de trabalho
escreveu 9 months ago: Ontem à conversa com um amigo, foi-me colocada a seguinte pergunta: Que ferramentas (informáticas) u … mais →
Python Tip #3: Temporary Files
escreveu 9 months ago: Today I had a problem at work. I was using a tool called NEEDLE, which is command-line based, and re … mais →
Model-o-Matic.py: A new version
escreveu 10 months ago: We sometimes learn a small detail that changes our way of thinking about a particular problem. That … mais →
PyMol API: Simple Example
escreveu 10 months ago: PyMol is a USER-SPONSORED molecular visualization system on an OPEN-SOURCE foundation. And, it … mais →
Script for batch RMS protein calculation: UPDATE
escreveu 11 months ago: I updated the script here on this post to include some options. I have it currently on my Software f … mais →
Script for batch protein RMS calculation
— 2 comments
escreveu 11 months ago: First of all, the script depends on a tool named ProFit, developed and maintained by Dr. Andrew C.R. … mais →
OpenOffice Calc: Colorir de acordo com valor
escreveu 11 months ago: Quando se tem uma coluna de valores e se quer fazer uma análise de quais estão dentro de um interval … mais →
Converting between AminoAcid Letter Codes
escreveu 1 year ago: So I don’t have to write it again and again: AALetterCode = {'ILE': 'I', 'GLN': 'Q', 'GLY': 'G … mais →
Model-o-Matic: Modelling turned easy(er)
escreveu 1 year ago: This small set of functions can be used in many situations, but they were made to fulfill one single … mais →
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